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Sample GSM2113 Query DataSets for GSM2113
Status Public on Jun 27, 2002
Title HS_578T_CL5006__BREAST
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HS_578T_CL5006__BREAST
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2729
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1231 1216 814 916 840 1150 1115 .3 0 .75 0 0 0 1.942 926 52 9 17 74 82
2 1223 1192 744 912 792 1084 1019 .457 0 .25 0 0 0 1.457 757 52 8 16 82 90
3 1204 1168 90 893 141 879 752 1030 193 1223 .628 0 1.101 1.27 1 3 .638 .466 1.567 2.144 1.325 605 52 8 16 91 99 1.101
4 1195 1160 727 872 736 1008 995 .455 0 2.75 0 0 0 1.471 623 52 8 16 100 108
5 1191 1152 729 1 790 728 997 1 998 .785 0 1.2 0 0 0 1.22 617 52 8 16 108 116
6 1191 1144 692 782 720 986 947 .777 0 .625 0 0 0 1.179 617 52 8 16 117 125
7 1158 1136 684 735 704 964 936 .574 0 1.5 0 0 0 .819 623 52 8 16 126 134
8 1146 1128 684 713 696 953 936 .666 0 1 0 0 0 .555 623 52 8 16 135 143
9 1123 1112 683 696 688 942 935 .409 0 1 0 0 0 .316 617 52 8 16 143 151
10 1119 1104 68 741 61 695 680 931 84 1015 .604 0 .305 .36 1 0 1.115 .81 .897 1.235 .322 617 52 8 16 152 160 .305
11 1112 1096 622 696 680 931 852 .614 0 2 0 0 0 .399 623 52 8 16 161 169
12 1107 1088 680 702 688 942 931 .606 0 2 0 0 0 .445 623 52 8 16 170 178
13 1104 1088 687 705 688 942 941 .611 0 2.333 0 0 0 .435 617 52 8 16 178 186
14 1091 1088 640 719 704 964 876 .495 0 4 0 0 0 .61 617 52 8 16 187 195
15 1102 1096 727 756 728 997 995 .374 0 .5 0 0 0 .514 623 52 8 16 196 204
16 1114 1112 776 801 776 1063 1063 .356 0 1.333 0 0 0 .472 623 52 8 16 205 213
17 1129 1120 845 21 852 824 1128 29 1157 .207 0 1 0 0 0 .32 617 52 8 16 213 221
18 1145 1136 3 997 85 908 912 1249 116 1365 .348 0 5.273 2.5 0 0 .035 .026 28.333 38.667 .526 605 52 8 16 222 230 5.273
19 1150 1144 780 927 928 1271 1068 .736 0 2 0 0 0 1.075 623 52 8 16 231 239
20 1146 1136 819 923 920 1260 1121 .58 0 2.6 0 0 0 .886 617 52 8 16 239 247

Total number of rows: 9984

Table truncated, full table size 1188 Kbytes.




Supplementary data files not provided
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