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Sample GSM2111446 Query DataSets for GSM2111446
Status Public on Feb 22, 2018
Title corrected clone 1-B10-E2 0.5%
Sample type SRA
Source name colorectal cancer cell line HCT116
Organism Homo sapiens
Characteristics cell line: HCT116
tissue: colon
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using an RNeasy Plus Mini kit (Qiagen). The RNA integrity and concentration was determined on a Bioanalyzer instrument (Agilent) using an RNA 6000 Nano kit.
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Ion Torrent Proton
Description corrected clone 1-B10-E2 0.5%
Data processing The reads were aligned to the human genome hg19 assembly ( using Tophat2 software (version 2.0.4)
The FPKM summary and statistical tests were performed using the Cufflinks tool (version 2.2.1)
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files with RPKM values for each Sample.
Submission date Apr 07, 2016
Last update date May 15, 2019
Contact name L. H.
Organization name Uppsala University
Street address Dag Hammarskjölds Väg 20
City Uppsala
ZIP/Postal code 751 85
Country Sweden
Platform ID GPL17303
Series (1)
GSE80033 Somatic PRDM2 c.4459delA mutations in colorectal cancers control histone methylation and tumor growth
BioSample SAMN04622914
SRA SRX1686472

Supplementary file Size Download File type/resource
GSM2111446_sample10_FPKM.txt.gz 133.8 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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