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Sample GSM2110 Query DataSets for GSM2110
Status Public on Jun 27, 2002
Title SK-OV-3_CL6011_OVARIAN
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SK-OV-3_CL6011_OVARIAN
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2726
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1460 1440 6 811 821 816 792 787 .238 0 .5 0 0 .067 1213 52 33 41 37 45
2 1447 1440 22 802 816 808 784 778 .155 0 .16 0 0 .092 1085 52 32 40 45 53
3 1444 1440 820 12 812 808 784 12 796 .249 0 1 0 0 0 .174 945 52 32 40 54 62
4 1449 1448 805 5 809 800 776 5 781 .174 0 .818 0 0 0 .123 955 52 32 40 63 71
5 1449 1440 796 807 800 776 772 .169 0 .438 0 0 0 .123 947 52 32 40 72 80
6 1439 1432 18 785 799 792 768 762 0 .474 0 0 937 52 32 40 80 88
7 1439 1432 7 774 797 792 768 751 .201 0 .6 0 0 .12 933 52 32 40 89 97
8 1438 1432 796 4 799 792 768 4 772 .084 0 .539 0 0 0 .053 937 52 32 40 98 106
9 1432 1424 11 806 14 800 792 768 14 782 .113 0 .348 .5 0 0 .786 .786 1.273 1.273 .075 931 52 32 40 107 115 .348
10 1437 1424 190 1002 210 802 792 768 204 972 .728 0 .103 1 3 26 .905 .931 1.105 1.074 .661 925 52 32 40 115 123 .103
11 1436 1432 827 27 803 800 776 26 802 .129 0 1.429 0 0 0 .105 925 52 32 40 124 132
12 1439 1440 778 804 800 776 755 .05 0 .706 0 0 0 .039 931 52 32 40 133 141
13 1434 1432 40 1015 215 805 800 776 209 985 .737 0 2.385 1.444 3 9 .186 .191 5.375 5.225 2.94 935 52 32 40 142 150 2.385
14 1435 1440 808 807 808 784 784 .066 0 1 0 0 0 .039 951 52 31 39 151 159
15 1443 1448 826 18 810 808 784 17 801 .035 0 .333 0 0 0 .023 945 52 31 39 159 167
16 1447 1448 804 810 808 784 780 .07 0 1.2 0 0 0 .052 945 52 31 39 168 176
17 1443 1440 11 776 808 808 784 753 0 .318 0 0 949 52 31 39 177 185
18 1457 1448 25 768 812 808 784 745 .023 0 .444 0 0 .012 943 52 31 39 186 194
19 1468 1456 803 817 816 792 779 .064 0 1.143 0 0 0 .032 933 52 31 39 194 202
20 1470 1464 819 3 815 816 792 3 795 .08 0 .4 0 0 0 .041 929 52 31 39 203 211

Total number of rows: 9984

Table truncated, full table size 1208 Kbytes.




Supplementary data files not provided
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