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Sample GSM2109 Query DataSets for GSM2109
Status Public on Jun 27, 2002
Title SK-MEL-2_CL10005_MELANOMA
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name SK-MEL-2_CL10005_MELANOMA
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2724
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1392 992 12 710 14 1087 696 764 16 780 .986 0 .415 1 0 0 .857 .75 1.167 1.333 .967 1213 52 29 37 28 36 .415
2 1431 976 50 683 1145 712 782 750 .986 0 .579 0 0 .967 1085 52 28 36 36 44
3 1471 960 6 709 1223 728 800 779 .987 0 1.143 0 0 .967 937 52 28 36 45 53
4 1361 944 15 717 1157 744 817 787 .989 0 .333 0 0 .999 951 52 28 36 54 62
5 937 928 710 766 752 826 780 .438 0 1 0 0 0 .614 945 52 28 36 62 70
6 939 920 740 785 768 843 813 .58 0 .5 0 0 0 .567 945 52 28 36 71 79
7 930 912 17 758 788 768 843 832 .585 0 .5 0 0 .583 945 52 28 36 80 88
8 925 904 732 785 768 843 804 .523 0 .5 0 0 0 .495 947 52 28 36 89 97
9 922 904 40 749 777 768 843 823 .543 0 .667 0 0 .41 937 52 28 36 97 105
10 914 904 188 941 181 765 760 835 199 1034 .662 0 .082 1 15 26 1.039 .945 .963 1.059 .636 933 52 28 36 106 114 .082
11 912 904 105 829 69 762 760 835 75 910 .384 0 -.485 .539 0 1 1.522 1.4 .657 .714 .276 935 52 28 36 115 123 -.485
12 907 896 50 731 762 760 835 803 .197 0 .375 0 0 .125 931 52 28 36 124 132
13 907 896 46 746 758 752 826 819 .251 0 .65 1 0 .145 925 52 28 36 132 140
14 902 888 22 724 756 752 826 795 .177 0 .714 0 0 .116 925 52 28 36 141 149
15 929 888 86 745 770 752 826 818 .585 0 .342 0 0 .218 931 52 28 36 150 158
16 928 888 28 717 773 752 826 787 .577 0 .5 0 0 .216 931 52 28 36 159 167
17 924 888 2 749 799 752 826 823 .236 0 1.444 0 1 .224 925 52 28 36 167 175
18 945 880 3 707 874 752 826 776 .397 0 2 0 0 .528 921 52 28 36 176 184
19 904 880 39 731 856 752 826 803 .623 0 .55 1 1 1.817 931 52 28 36 185 193
20 898 872 102 736 857 760 835 808 .577 0 .375 7 0 1.594 945 52 27 35 193 201

Total number of rows: 9984

Table truncated, full table size 1206 Kbytes.




Supplementary data files not provided
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