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Sample GSM2104 Query DataSets for GSM2104
Status Public on Jun 27, 2002
Title UO-31_CL9004__RENAL
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name UO-31_CL9004__RENAL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2788
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1730 1608 12 589 13 697 576 559 12 571 .972 0 0 .529 0 0 .923 1 1.083 1 1.013 1213 52 18 26 39 47 0
2 1733 1600 12 611 35 709 576 559 34 593 .972 0 1.503 .9 0 0 .343 .353 2.917 2.833 1.012 1069 52 18 26 47 55 1.503
3 1715 1576 38 582 14 708 568 551 14 565 .974 0 -1.441 .5 0 0 2.714 2.714 .368 .368 1.015 925 52 18 26 56 64 -1.441
4 1752 1552 84 570 26 729 544 528 25 553 .933 0 -1.748 .364 0 0 3.231 3.36 .31 .298 .874 931 52 18 26 65 73 -1.748
5 1628 1528 527 605 536 520 511 .865 0 .263 0 0 0 .453 925 52 18 26 73 81
6 1603 1496 22 512 596 528 512 497 .871 0 .29 0 0 .457 913 52 18 26 82 90
7 1587 1472 32 525 5 590 520 504 5 509 .868 0 -2.678 .5 0 0 6.4 6.4 .156 .156 .456 931 52 18 26 91 99 -2.678
8 1506 1464 527 7 546 520 504 7 511 .685 0 .933 0 0 0 .436 925 52 18 26 99 107
9 1483 1456 508 534 520 504 493 .38 0 .529 0 0 0 .195 925 52 18 26 108 116
10 1475 1448 169 659 139 533 520 504 135 639 .591 0 -.324 .587 7 30 1.216 1.252 .822 .799 .401 931 52 18 26 117 125 -.324
11 1487 1448 133 521 1 553 520 504 1 505 .709 0 -7.055 .209 1 0 133 133 .008 .008 .509 931 52 18 26 126 134 -7.055
12 1490 1440 110 522 2 561 520 504 2 506 .782 0 -5.781 .214 0 1 55 55 .018 .018 .602 925 52 18 26 134 142 -5.781
13 1480 1440 536 24 551 512 497 23 520 .788 0 .636 0 1 0 .622 913 52 18 26 143 151
14 1472 1432 530 18 547 512 497 17 514 .781 0 .625 0 0 0 .622 931 52 18 26 152 160
15 1515 1424 66 550 38 569 512 497 36 533 .876 0 -.874 .464 0 1 1.737 1.833 .576 .545 .624 925 52 18 26 160 168 -.874
16 1494 1416 505 9 550 496 481 9 490 .87 0 .259 0 0 0 .617 925 52 18 26 169 177
17 1489 1408 492 549 496 481 477 .866 0 .5 0 0 0 .613 931 52 18 26 178 186
18 1513 1408 488 575 504 489 473 .88 0 .652 0 0 0 .643 931 52 18 26 187 195
19 1440 1400 483 527 496 481 468 .806 0 .321 0 0 0 .618 925 52 18 26 195 203
20 1443 1400 18 498 2 524 496 481 2 483 .791 0 -3.17 .652 0 0 9 9 .111 .111 .609 913 52 18 26 204 212 -3.17

Total number of rows: 9984

Table truncated, full table size 1222 Kbytes.




Supplementary data files not provided
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