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Sample GSM2102283 Query DataSets for GSM2102283
Status Public on Mar 31, 2019
Title Right lesion
Sample type RNA
 
Source name Brain tissue from GBM patient
Organism Homo sapiens
Characteristics histopathological diagnostic: : GBM, grade 4
tissue: Right lesion
Extracted molecule total RNA
Extraction protocol Trizol extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 6 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Standard Affymetrix procedures
Scan protocol GeneChips were scanned by the Affymetrix Scanner 3000.
Description Gene expression data from right lesion.
Data processing The data were analyzed with Affymetrix GeneChip Command Console version 4.0 using Affymetrix default analysis settings and global scaling as normalization method. The trimmed mean target intensity of each array was arbitrarily set to 100.
 
Submission date Mar 31, 2016
Last update date Mar 31, 2019
Contact name Haizhong Feng
E-mail(s) fenghaizhong@sjtu.edu.cn
Phone 862168383921
Organization name Shanghai Jiao Tong University
Department Ren Ji Hospital
Street address Pujian Road 160
City Shanghai
State/province Shanghai
ZIP/Postal code 200127
Country China
 
Platform ID GPL17585
Series (1)
GSE79772 Expression data from glioma patient

Data table header descriptions
ID_REF
VALUE Quantification
DETECTION P-VALUE

Data table
ID_REF VALUE DETECTION P-VALUE
JUC01000001.hg.1 7.0423 0.00280298
JUC01000002.hg.1 3.46645 0.450285
JUC01000003.hg.1 6.81723 0.00100854
JUC01000004.hg.1 4.49181 0.0734851
JUC01000005.hg.1 6.32263 0.00377838
JUC01000006.hg.1 5.38394 0.0160535
JUC01000007.hg.1 4.66245 0.0736484
JUC01000008.hg.1 8.21936 0.000262679
JUC01000009.hg.1 4.96901 0.016815
JUC01000010.hg.1 4.5157 0.0605742
JUC01000011.hg.1 16.6486 1.72861e-06
JUC01000012.hg.1 6.46737 0.0213562
JUC01000013.hg.1 18.3488 4.63897e-09
JUC01000014.hg.1 10.831 1.08206e-07
JUC01000015.hg.1 4.63076 0.0122956
JUC01000016.hg.1 6.78981 0.00114837
JUC01000017.hg.1 7.96833 5.50907e-06
JUC01000018.hg.1 8.02445 0.0048384
JUC01000019.hg.1 7.61617 0.000210169
JUC01000020.hg.1 7.61617 0.000210169

Total number of rows: 914585

Table truncated, full table size 31952 Kbytes.




Supplementary file Size Download File type/resource
GSM2102283_M-R.CEL.gz 23.7 Mb (ftp)(http) CEL
GSM2102283_M-R.CHP.gz 9.3 Mb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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