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Sample GSM2099 Query DataSets for GSM2099
Status Public on Jun 27, 2002
Title ADR-RES_CL5002_UNKNOWN
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name ADR-RES_CL5002_UNKNOWN
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2780
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1038 1024 1153 1219 1200 1034 993 .182 0 1.778 0 0 0 .197 1213 52 16 24 76 84
2 1009 992 26 1119 1136 1120 965 964 .157 0 .875 0 0 .158 1069 52 16 24 84 92
3 995 968 35 1022 1057 1040 896 881 .357 0 .581 0 0 .174 937 52 16 24 93 101
4 969 952 26 1017 25 1008 992 855 21 876 .395 0 -.308 1 0 0 1.04 1.238 .962 .808 .197 931 52 16 24 102 110 -.308
5 957 936 532 983 23 971 960 827 20 847 .062 0 -4.733 1 5 0 23.13 26.6 .043 .038 .004 931 52 16 24 111 119 -4.733
6 950 936 10 930 943 936 806 801 .411 0 2 0 0 .192 925 52 16 24 119 127
7 946 928 16 912 922 920 793 786 .393 0 .778 0 0 .188 925 52 16 24 128 136
8 927 920 7 899 906 904 779 775 .081 0 1 0 0 .098 931 52 16 24 137 145
9 919 904 40 864 892 888 765 744 .007 0 .64 0 0 .009 931 52 16 24 146 154
10 918 904 392 1249 369 887 880 758 318 1076 .73 0 -.302 1 38 46 1.062 1.233 .941 .811 .698 925 52 16 24 154 162 -.302
11 914 904 116 957 85 882 872 751 74 825 .298 0 -.649 1 3 1 1.365 1.568 .733 .638 .296 925 52 16 24 163 171 -.649
12 910 896 61 827 882 872 751 712 .216 0 .571 0 0 .274 943 52 16 24 172 180
13 910 896 29 841 880 864 744 725 .2 0 1.5 0 0 .267 931 52 16 24 181 189
14 905 896 115 867 3 874 864 744 3 747 .157 0 -5.261 .238 1 0 38.333 38.333 .026 .026 .16 931 52 16 24 190 198 -5.261
15 907 896 80 968 112 879 856 737 97 834 .417 0 .278 1.385 0 1 .714 .825 1.4 1.213 .662 925 52 16 24 198 206 .278
16 898 888 20 819 871 848 731 706 .194 0 1 0 0 .281 925 52 16 24 207 215
17 896 888 59 847 7 864 840 724 6 730 .237 0 -3.298 .769 0 0 8.429 9.833 .119 .102 .32 931 52 16 24 216 224 -3.298
18 901 888 65 872 32 863 840 724 27 751 .291 0 -1.267 .81 1 0 2.031 2.407 .492 .415 .353 931 52 16 24 225 233 -1.267
19 895 888 48 816 852 840 724 703 .004 0 1.2 0 0 .005 925 52 16 24 233 241
20 893 888 41 812 847 840 724 700 .132 0 .5 0 0 .136 925 52 16 24 242 250

Total number of rows: 9984

Table truncated, full table size 1246 Kbytes.




Supplementary data files not provided
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