NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM2098 Query DataSets for GSM2098
Status Public on Jun 27, 2002
Title T-47D__CL5014__BREAST
Sample type RNA
 
Channel 1
Source name Reference_Pool
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name T-47D__CL5014__BREAST
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Cell-line
Subcategory: Pharmacogenomics
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = dtp2779
 
Submission date Jun 21, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL167
Series (1)
GSE59 Human cancer cell lines

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1402 1344 492 890 50 862 840 1050 62 1112 .417 0 -2.988 .225 19 3 9.84 7.935 .102 .126 .267 1213 52 20 28 73 81 -2.988
2 1414 1320 819 989 832 1040 1023 .906 0 .462 0 0 0 1.955 1085 52 19 27 81 89
3 1381 1272 757 995 808 1010 946 .915 0 .583 0 0 0 1.982 945 52 19 27 90 98
4 1369 1256 754 998 800 1000 942 .901 0 .455 0 0 0 1.87 951 52 19 27 99 107
5 1414 1248 754 1016 792 990 942 .835 0 .75 0 0 0 1.435 951 52 19 27 108 116
6 1348 1240 735 861 776 970 918 .911 0 .619 0 0 0 .656 945 52 19 27 116 124
7 1341 1232 726 857 776 970 907 .907 0 .324 0 0 0 .654 945 52 19 27 125 133
8 1340 1232 718 854 776 970 897 .911 0 .778 0 0 0 .66 951 52 19 27 134 142
9 1262 1224 1 728 789 752 940 910 .578 0 .353 0 0 .673 951 52 19 27 143 151
10 1260 1232 301 1100 356 765 744 930 445 1375 .862 0 .564 1.159 32 32 .846 .676 1.183 1.478 .926 945 52 19 27 151 159 .564
11 1263 1232 71 806 70 759 736 920 87 1007 .647 0 .293 .962 0 1 1.014 .816 .986 1.225 .556 945 52 19 27 160 168 .293
12 1266 1240 37 729 751 736 920 911 .532 0 .667 0 0 .411 963 52 19 27 169 177
13 1243 1232 2 724 4 734 720 900 5 905 .359 0 1.322 .5 0 0 .5 .4 2 2.5 .276 951 52 19 27 178 186 1.322
14 1235 1224 104 752 32 733 720 900 40 940 .381 0 -1.379 .5 0 0 3.25 2.6 .308 .385 .276 951 52 19 27 187 195 -1.379
15 1234 1232 69 763 43 729 720 900 53 953 .044 0 -.381 1.333 0 1 1.605 1.302 .623 .768 .036 945 52 19 27 195 203 -.381
16 1220 1216 32 687 733 712 890 858 .058 0 .546 0 0 .066 945 52 19 27 204 212
17 1217 1216 59 710 728 712 890 887 .13 0 .5 0 0 .167 951 52 19 27 213 221
18 1207 1200 684 724 704 880 855 .2 0 .667 0 0 0 .26 951 52 19 27 222 230
19 1192 1184 6 703 734 704 880 878 .288 0 .8 0 0 .474 945 52 19 27 230 238
20 1166 1160 14 735 47 712 688 860 58 918 .251 0 2.051 1.167 0 0 .298 .241 3.357 4.143 .344 945 52 19 27 239 247 2.051

Total number of rows: 9984

Table truncated, full table size 1239 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap