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Sample GSM2082965 Query DataSets for GSM2082965
Status Public on Mar 08, 2016
Title SAMPLE_93_68_541311
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2013
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.42366
cg00000108 0.93091
cg00000109 0.84497
cg00000165 0.27442
cg00000236 0.74288
cg00000289 0.71015
cg00000292 0.77096
cg00000321 0.37107
cg00000363 0.39731
cg00000622 0.0498
cg00000658 0.87025
cg00000714 0.14106
cg00000721 0.90378
cg00000734 0.12828
cg00000769 0.08499
cg00000807 0.90655
cg00000884 0.8383
cg00000905 0.14799
cg00000924 0.69879
cg00000948 0.91952

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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