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Sample GSM2082963 Query DataSets for GSM2082963
Status Public on Mar 08, 2016
Title SAMPLE_91_67_641115
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2013
disorder state: control
psychiatric disorder status: Remittent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.43266
cg00000108 0.87008
cg00000109 0.85326
cg00000165 0.48546
cg00000236 0.75587
cg00000289 0.54613
cg00000292 0.7593
cg00000321 0.3868
cg00000363 0.32443
cg00000622 0.05105
cg00000658 0.75066
cg00000714 0.20765
cg00000721 0.85383
cg00000734 0.11292
cg00000769 0.10011
cg00000807 0.76968
cg00000884 0.80048
cg00000905 0.30446
cg00000924 0.63002
cg00000948 0.79343

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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