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Sample GSM2082958 Query DataSets for GSM2082958
Status Public on Mar 08, 2016
Title SAMPLE_86_61_331101
Sample type genomic
 
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2013
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
 
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
 
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
E-mail(s) andresbt10@gmail.com
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Lab BRAIN
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
 
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.51594
cg00000108 0.91346
cg00000109 0.84313
cg00000165 0.35487
cg00000236 0.77741
cg00000289 0.56281
cg00000292 0.77413
cg00000321 0.3159
cg00000363 0.32131
cg00000622 0.0513
cg00000658 0.81224
cg00000714 0.25161
cg00000721 0.89713
cg00000734 0.13567
cg00000769 0.09581
cg00000807 0.85181
cg00000884 0.87132
cg00000905 0.16806
cg00000924 0.69294
cg00000948 0.80429

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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