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Sample GSM2082957 Query DataSets for GSM2082957
Status Public on Mar 08, 2016
Title SAMPLE_85_60_170125
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2013
disorder state: control
psychiatric disorder status: Remittent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.44937
cg00000108 0.92458
cg00000109 0.84412
cg00000165 0.37075
cg00000236 0.75659
cg00000289 0.55911
cg00000292 0.74422
cg00000321 0.40419
cg00000363 0.46809
cg00000622 0.06018
cg00000658 0.83801
cg00000714 0.22888
cg00000721 0.87818
cg00000734 0.10137
cg00000769 0.08594
cg00000807 0.85236
cg00000884 0.84175
cg00000905 0.21411
cg00000924 0.73752
cg00000948 0.86876

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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