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Sample GSM2082956 Query DataSets for GSM2082956
Status Public on Mar 08, 2016
Title SAMPLE_84_59_560213
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2013
disorder state: anxiety disorder
psychiatric disorder status: Persistent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.51006
cg00000108 0.90395
cg00000109 0.83756
cg00000165 0.3716
cg00000236 0.73942
cg00000289 0.61344
cg00000292 0.81034
cg00000321 0.28525
cg00000363 0.33094
cg00000622 0.03932
cg00000658 0.84164
cg00000714 0.2069
cg00000721 0.87485
cg00000734 0.1297
cg00000769 0.10059
cg00000807 0.87237
cg00000884 0.84664
cg00000905 0.21006
cg00000924 0.69836
cg00000948 0.88594

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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