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Sample GSM2082945 Query DataSets for GSM2082945
Status Public on Mar 08, 2016
Title SAMPLE_73_44_570202
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2013
disorder state: anxiety disorder
psychiatric disorder status: Persistent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.35024
cg00000108 0.91193
cg00000109 0.8215
cg00000165 0.30633
cg00000236 0.73334
cg00000289 0.65207
cg00000292 0.78258
cg00000321 0.33999
cg00000363 0.29615
cg00000622 0.05341
cg00000658 0.83199
cg00000714 0.18527
cg00000721 0.88162
cg00000734 0.11298
cg00000769 0.11725
cg00000807 0.91697
cg00000884 0.85203
cg00000905 0.20953
cg00000924 0.71358
cg00000948 0.87846

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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