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Sample GSM2082931 Query DataSets for GSM2082931
Status Public on Mar 08, 2016
Title SAMPLE_59_18_580214
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2013
disorder state: anxiety disorder
psychiatric disorder status: Incident Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.38334
cg00000108 0.91102
cg00000109 0.84562
cg00000165 0.37399
cg00000236 0.76793
cg00000289 0.68247
cg00000292 0.75494
cg00000321 0.4066
cg00000363 0.38471
cg00000622 0.04114
cg00000658 0.81992
cg00000714 0.18004
cg00000721 0.88551
cg00000734 0.11889
cg00000769 0.1053
cg00000807 0.88414
cg00000884 0.85344
cg00000905 0.19964
cg00000924 0.659
cg00000948 0.86007

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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