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Sample GSM2082919 Query DataSets for GSM2082919
Status Public on Mar 08, 2016
Title SAMPLE_47_539_571308
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2008
disorder state: anxiety disorder
psychiatric disorder status: Persistent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.42495
cg00000108 0.91144
cg00000109 0.82822
cg00000165 0.41124
cg00000236 0.73931
cg00000289 0.68751
cg00000292 0.83707
cg00000321 0.34726
cg00000363 0.32443
cg00000622 0.04467
cg00000658 0.8335
cg00000714 0.17875
cg00000721 0.88341
cg00000734 0.10357
cg00000769 0.07607
cg00000807 0.89692
cg00000884 0.7994
cg00000905 0.18357
cg00000924 0.69304
cg00000948 0.89269

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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