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Sample GSM2082907 Query DataSets for GSM2082907
Status Public on Mar 08, 2016
Title SAMPLE_35_410_580214
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2008
disorder state: control
psychiatric disorder status: Incident Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.41038
cg00000108 0.89869
cg00000109 0.86809
cg00000165 0.3582
cg00000236 0.78283
cg00000289 0.65796
cg00000292 0.76092
cg00000321 0.36009
cg00000363 0.39432
cg00000622 0.05214
cg00000658 0.85313
cg00000714 0.2087
cg00000721 0.8818
cg00000734 0.1146
cg00000769 0.08866
cg00000807 0.86771
cg00000884 0.81828
cg00000905 0.17707
cg00000924 0.67264
cg00000948 0.9025

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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