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Sample GSM2082906 Query DataSets for GSM2082906
Status Public on Mar 08, 2016
Title SAMPLE_34_405_680232
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2008
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.45597
cg00000108 0.92258
cg00000109 0.86409
cg00000165 0.35377
cg00000236 0.76082
cg00000289 0.64415
cg00000292 0.86393
cg00000321 0.32606
cg00000363 0.3415
cg00000622 0.04883
cg00000658 0.8639
cg00000714 0.24472
cg00000721 0.89261
cg00000734 0.12199
cg00000769 0.07217
cg00000807 0.8736
cg00000884 0.84106
cg00000905 0.18786
cg00000924 0.70527
cg00000948 0.87758

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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