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Sample GSM2082896 Query DataSets for GSM2082896
Status Public on Mar 08, 2016
Title SAMPLE_24_240_630205
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2008
disorder state: anxiety disorder
psychiatric disorder status: Remittent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.42208
cg00000108 0.89623
cg00000109 0.85987
cg00000165 0.42479
cg00000236 0.78443
cg00000289 0.57626
cg00000292 0.71409
cg00000321 0.27623
cg00000363 0.32627
cg00000622 0.0477
cg00000658 0.78045
cg00000714 0.22034
cg00000721 0.88982
cg00000734 0.13805
cg00000769 0.10134
cg00000807 0.7942
cg00000884 0.79726
cg00000905 0.18478
cg00000924 0.68352
cg00000948 0.87642

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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