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Sample GSM2082894 Query DataSets for GSM2082894
Status Public on Mar 08, 2016
Title SAMPLE_22_218_361328
Sample type genomic
 
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2008
disorder state: anxiety disorder
psychiatric disorder status: Persistent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
 
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
 
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
E-mail(s) andresbt10@gmail.com
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Lab BRAIN
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
 
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.49566
cg00000108 0.93173
cg00000109 0.82859
cg00000165 0.3045
cg00000236 0.78821
cg00000289 0.68167
cg00000292 0.8054
cg00000321 0.33193
cg00000363 0.36313
cg00000622 0.03647
cg00000658 0.85707
cg00000714 0.15851
cg00000721 0.8868
cg00000734 0.11298
cg00000769 0.10587
cg00000807 0.89621
cg00000884 0.81196
cg00000905 0.17754
cg00000924 0.69642
cg00000948 0.90312

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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