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Sample GSM2082887 Query DataSets for GSM2082887
Status Public on Mar 08, 2016
Title SAMPLE_15_186_331101
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: female
collection year: 2008
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.48215
cg00000108 0.94159
cg00000109 0.87411
cg00000165 0.29445
cg00000236 0.72212
cg00000289 0.78823
cg00000292 0.8073
cg00000321 0.33105
cg00000363 0.37697
cg00000622 0.03763
cg00000658 0.85279
cg00000714 0.16328
cg00000721 0.92069
cg00000734 0.13016
cg00000769 0.09722
cg00000807 0.89729
cg00000884 0.82054
cg00000905 0.13792
cg00000924 0.73044
cg00000948 0.92101

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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