|
| Status |
Public on Mar 08, 2016 |
| Title |
SAMPLE_11_136_310629 |
| Sample type |
genomic |
| |
|
| Source name |
Saliva
|
| Organism |
Homo sapiens |
| Characteristics |
gender: female
collection year: 2008
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
|
| |
|
| Hybridization protocol |
EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Data processing |
Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
|
| |
|
| Submission date |
Mar 07, 2016 |
| Last update date |
Mar 08, 2016 |
| Contact name |
Andressa Bortoluzzi |
| E-mail(s) |
andresbt10@gmail.com
|
| Organization name |
Universidade Federal do Rio Grande do Sul -UFRGS
|
| Department |
Psychiatric
|
| Lab |
BRAIN
|
| Street address |
Ramiro Barcelos, 2350
|
| City |
Porto Alegre |
| State/province |
RS |
| ZIP/Postal code |
90035-903 |
| Country |
Brazil |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE78975 |
Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders |
|
