GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2082878 Query DataSets for GSM2082878
Status Public on Mar 08, 2016
Title SAMPLE_6_75_361223
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2008
disorder state: control
psychiatric disorder status: Typically Developing Adolescent
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.464
cg00000108 0.92173
cg00000109 0.83031
cg00000165 0.32658
cg00000236 0.75687
cg00000289 0.66942
cg00000292 0.80238
cg00000321 0.33335
cg00000363 0.37734
cg00000622 0.04297
cg00000658 0.84582
cg00000714 0.17961
cg00000721 0.894
cg00000734 0.13127
cg00000769 0.07967
cg00000807 0.89809
cg00000884 0.83456
cg00000905 0.16161
cg00000924 0.68976
cg00000948 0.88358

Total number of rows: 485507

Table truncated, full table size 8966 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap