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Sample GSM2082877 Query DataSets for GSM2082877
Status Public on Mar 08, 2016
Title SAMPLE_5_69_371222
Sample type genomic
Source name Saliva
Organism Homo sapiens
Characteristics gender: male
collection year: 2008
disorder state: anxiety disorder
psychiatric disorder status: Persistent Anxiety Disorder
sample type: saliva
Extracted molecule genomic DNA
Extraction protocol genomic DNA of saliva was extracted using DNA collection Oragene Kit (DNA Genotek, Ottawa, Canada) according to standard instructions
Label Cy3, Cy5
Label protocol Standard Infinium HumanMethylation450 BeadChip Illumina Protocol
Hybridization protocol EZ DNA Methylation-Gold Kit (Zymo Research) was used to DNA bisulphite convertion and the DNA sample was amplified, fragmented and hybridised to Infinium HumanMethylation450 BeadChip Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Data processing workflow described in the lumi R package have been used for color bias and background adjustments, qc plots and quantile normalization based on color balance adjusted data.
Submission date Mar 07, 2016
Last update date Mar 08, 2016
Contact name Andressa Bortoluzzi
Organization name Universidade Federal do Rio Grande do Sul -UFRGS
Department Psychiatric
Street address Ramiro Barcelos, 2350
City Porto Alegre
State/province RS
ZIP/Postal code 90035-903
Country Brazil
Platform ID GPL13534
Series (1)
GSE78975 Longitudinal DNA Methylome analysis from saliva sample of adolescents with anxiety disorders and controls to anxiety disorders

Data table header descriptions
VALUE Average Beta

Data table
cg00000029 0.424
cg00000108 0.9189
cg00000109 0.80688
cg00000165 0.38809
cg00000236 0.79736
cg00000289 0.66333
cg00000292 0.78115
cg00000321 0.34054
cg00000363 0.26552
cg00000622 0.04877
cg00000658 0.81489
cg00000714 0.2043
cg00000721 0.86151
cg00000734 0.12406
cg00000769 0.08486
cg00000807 0.92136
cg00000884 0.80093
cg00000905 0.18438
cg00000924 0.6723
cg00000948 0.8655

Total number of rows: 485507

Table truncated, full table size 8967 Kbytes.

Supplementary data files not provided
Processed data included within Sample table

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