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Sample GSM207635 Query DataSets for GSM207635
Status Public on Nov 01, 2007
Title L1236 + 5 µM 5-aza-dC (5 days) (2)
Sample type RNA
 
Source name Cell line
Organism Homo sapiens
Characteristics classical Hodgkin lymphoma
Biomaterial provider DSMZ
Treatment protocol 5 µM 5-aza-dC (5 days)
Growth protocol RPMI 1640 supplemented with 10% fetal bovine serum at 37°C and 5% CO2
Extracted molecule total RNA
Extraction protocol Qiagen
Label Biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description no
Data processing GCOS TGT=2000
 
Submission date Jul 05, 2007
Last update date Aug 14, 2011
Contact name Anke Ehlers
E-mail(s) anke.ehlers@charite.de
Organization name Charité Universitätsmedizin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
State/province Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE8388 Epigenetic upregulation of B-cell inappropriate genes induces extinction of B-cell program in classical Hodgkin lymphoma

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL detection yes or no
DETECTION P-VALUE propability of obtaining a significant result

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 115.29 P 0.026111
AFFX-BioB-M_at 111.044 P 0.0044838
AFFX-BioB-3_at 43.0224 A 0.175328
AFFX-BioC-5_at 197.437 P 0.00110197
AFFX-BioC-3_at 131.111 P 0.000662269
AFFX-BioDn-5_at 199.566 P 0.000753643
AFFX-BioDn-3_at 1263.3 P 0.000753643
AFFX-CreX-5_at 1911.97 P 4.42873e-05
AFFX-CreX-3_at 3056.88 P 4.42873e-05
AFFX-DapX-5_at 11.3088 A 0.185131
AFFX-DapX-M_at 31.1941 A 0.131361
AFFX-DapX-3_at 2.75572 A 0.868639
AFFX-LysX-5_at 2.46224 A 0.51489
AFFX-LysX-M_at 19.3369 A 0.313723
AFFX-LysX-3_at 2.43436 A 0.631562
AFFX-PheX-5_at 3.88031 A 0.672921
AFFX-PheX-M_at 2.964 A 0.794268
AFFX-PheX-3_at 10.2024 A 0.712257
AFFX-ThrX-5_at 3.46234 A 0.672921
AFFX-ThrX-M_at 8.51499 A 0.51489

Total number of rows: 22283

Table truncated, full table size 668 Kbytes.




Supplementary file Size Download File type/resource
GSM207635.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM207635.CHP.gz 6.2 Mb (ftp)(http) CHP
GSM207635.EXP.gz 330 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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