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Sample GSM207586 Query DataSets for GSM207586
Status Public on Nov 01, 2007
Title L428 + + 5 µM 5-aza-dC (5 days) (2)
Sample type RNA
 
Source name Cell line
Organism Homo sapiens
Characteristics classical Hodgkin lymphoma
Biomaterial provider DSMZ
Treatment protocol 5 µM 5-aza-dC (5 days)
Growth protocol RPMI 1640 supplemented with 10% fetal bovine serum at 37°C and 5% CO2
Extracted molecule total RNA
Extraction protocol Qiagen
Label Biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description no
Data processing GCOS TGT=2000
 
Submission date Jul 05, 2007
Last update date Aug 14, 2011
Contact name Anke Ehlers
E-mail(s) anke.ehlers@charite.de
Organization name Charité Universitätsmedizin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
State/province Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE8388 Epigenetic upregulation of B-cell inappropriate genes induces extinction of B-cell program in classical Hodgkin lymphoma

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL detection yes or no
DETECTION P-VALUE propability of obtaining a significant result

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 99.2514 P 0.0182806
AFFX-BioB-M_at 71.1968 P 0.000662269
AFFX-BioB-3_at 47.3088 A 0.0726999
AFFX-BioC-5_at 138.58 P 0.000509415
AFFX-BioC-3_at 114.503 P 0.000972149
AFFX-BioDn-5_at 179.94 P 0.000340305
AFFX-BioDn-3_at 1002.47 P 0.000581214
AFFX-CreX-5_at 1443.67 P 4.42873e-05
AFFX-CreX-3_at 2647.27 P 4.42873e-05
AFFX-DapX-5_at 11.9786 A 0.300606
AFFX-DapX-M_at 25.4309 A 0.139482
AFFX-DapX-3_at 2.367 A 0.897835
AFFX-LysX-5_at 5.64502 A 0.382599
AFFX-LysX-M_at 6.21029 A 0.659339
AFFX-LysX-3_at 2.47568 A 0.382599
AFFX-PheX-5_at 2.06948 A 0.897835
AFFX-PheX-M_at 1.07334 A 0.937071
AFFX-PheX-3_at 17.2676 A 0.470241
AFFX-ThrX-5_at 3.18027 A 0.686277
AFFX-ThrX-M_at 10.2179 A 0.5

Total number of rows: 22283

Table truncated, full table size 670 Kbytes.




Supplementary file Size Download File type/resource
GSM207586.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM207586.CHP.gz 6.2 Mb (ftp)(http) CHP
GSM207586.EXP.gz 515 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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