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Sample GSM207585 Query DataSets for GSM207585
Status Public on Nov 01, 2007
Title L428 + 5 µM 5-aza-dC (5 days) (1)
Sample type RNA
 
Source name Cell line
Organism Homo sapiens
Characteristics classical Hodgkin lymphoma
Biomaterial provider DSMZ
Treatment protocol 5 µM 5-aza-dC (5 days) (1)
Growth protocol RPMI 1640 supplemented with 10% fetal bovine serum at 37°C and 5% CO2
Extracted molecule total RNA
Extraction protocol Qiagen
Label Biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description no
Data processing GCOS TGT=2000
 
Submission date Jul 05, 2007
Last update date Aug 14, 2011
Contact name Anke Ehlers
E-mail(s) anke.ehlers@charite.de
Organization name Charité Universitätsmedizin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
State/province Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE8388 Epigenetic upregulation of B-cell inappropriate genes induces extinction of B-cell program in classical Hodgkin lymphoma

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL detection yes or no
DETECTION P-VALUE propability of obtaining a significant result

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 101.649 P 0.0219019
AFFX-BioB-M_at 108.032 P 0.00227496
AFFX-BioB-3_at 41.147 A 0.0780018
AFFX-BioC-5_at 163.591 P 0.000856509
AFFX-BioC-3_at 123.46 P 0.000662269
AFFX-BioDn-5_at 222.55 P 0.000258358
AFFX-BioDn-3_at 1201.31 P 0.000509415
AFFX-CreX-5_at 1715.27 P 4.42873e-05
AFFX-CreX-3_at 2781.37 P 4.42873e-05
AFFX-DapX-5_at 16.2805 A 0.116113
AFFX-DapX-M_at 26.9589 A 0.165861
AFFX-DapX-3_at 2.60394 A 0.945787
AFFX-LysX-5_at 15.5218 A 0.185131
AFFX-LysX-M_at 18.5522 A 0.455413
AFFX-LysX-3_at 1.29565 A 0.760937
AFFX-PheX-5_at 8.62372 A 0.559354
AFFX-PheX-M_at 1.09519 A 0.973889
AFFX-PheX-3_at 10.1254 A 0.574038
AFFX-ThrX-5_at 5.41651 A 0.631562
AFFX-ThrX-M_at 8.64521 A 0.724854

Total number of rows: 22283

Table truncated, full table size 668 Kbytes.




Supplementary file Size Download File type/resource
GSM207585.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM207585.CHP.gz 6.2 Mb (ftp)(http) CHP
GSM207585.EXP.gz 510 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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