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Sample GSM207582 Query DataSets for GSM207582
Status Public on Nov 01, 2007
Title KMH2 + 5 µM 5-aza-dC (5 days) (2)
Sample type RNA
 
Source name Cell line
Organism Homo sapiens
Characteristics classical Hodgkin lymphoma
Biomaterial provider DSMZ
Treatment protocol 5 µM 5-aza-dC (5 days)
Growth protocol RPMI 1640 supplemented with 10% fetal bovine serum at 37°C and 5% CO2
Extracted molecule total RNA
Extraction protocol Qiagen
Label Biotin
Label protocol Affymetrix standard protocol
 
Hybridization protocol Affymetrix standard protocol
Scan protocol Affymetrix standard protocol
Description no
Data processing GCOS TGT=2000
 
Submission date Jul 05, 2007
Last update date Aug 14, 2011
Contact name Anke Ehlers
E-mail(s) anke.ehlers@charite.de
Organization name Charité Universitätsmedizin
Department Institute of Pathology
Street address Hindenburgdamm 30
City Berlin
State/province Berlin
ZIP/Postal code 12200
Country Germany
 
Platform ID GPL96
Series (1)
GSE8388 Epigenetic upregulation of B-cell inappropriate genes induces extinction of B-cell program in classical Hodgkin lymphoma

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL detection yes or no
DETECTION P-VALUE propability of obtaining a significant result

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 68.1853 P 0.00762003
AFFX-BioB-M_at 79.8798 P 0.00159257
AFFX-BioB-3_at 35.4414 M 0.0584438
AFFX-BioC-5_at 159.02 P 0.000258358
AFFX-BioC-3_at 120.149 P 0.000169227
AFFX-BioDn-5_at 151.658 P 0.000258358
AFFX-BioDn-3_at 1055.01 P 0.000509415
AFFX-CreX-5_at 1539.48 P 4.42873e-05
AFFX-CreX-3_at 2359.52 P 4.42873e-05
AFFX-DapX-5_at 8.54996 A 0.147939
AFFX-DapX-M_at 18.4362 A 0.123572
AFFX-DapX-3_at 1.06914 A 0.9273
AFFX-LysX-5_at 3.59777 A 0.52976
AFFX-LysX-M_at 3.99494 A 0.617401
AFFX-LysX-3_at 0.864737 A 0.737173
AFFX-PheX-5_at 2.59039 A 0.699394
AFFX-PheX-M_at 0.70819 A 0.941556
AFFX-PheX-3_at 3.3336 A 0.860518
AFFX-ThrX-5_at 3.69192 A 0.749204
AFFX-ThrX-M_at 1.76921 A 0.724854

Total number of rows: 22283

Table truncated, full table size 671 Kbytes.




Supplementary file Size Download File type/resource
GSM207582.CEL.gz 3.5 Mb (ftp)(http) CEL
GSM207582.CHP.gz 6.1 Mb (ftp)(http) CHP
GSM207582.EXP.gz 330 b (ftp)(http) EXP
Processed data included within Sample table
Processed data provided as supplementary file

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