GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM2061431 Query DataSets for GSM2061431
Status Public on Feb 16, 2016
Title Human Peripheral Blood monocytes [Sample_73]
Sample type RNA
Source name aPD1+aCTLA4-pre (Q1)
Organism Homo sapiens
Characteristics gender: M
individual: Q
agent: Combo
time point: pre
cell type: Peripheral Blood monocytes
Growth protocol Not Applicable
Extracted molecule total RNA
Extraction protocol RNA was isolated from sorted peripheral blood monocytes using RNeasy Mini Kit (Qiagen), according to the manufacturer’s instructions.
Label biotin
Label protocol Single-stranded cDNA was generated from the amplified cRNA with the WT cDNA Synthesis Kit (Affymetrix) and then fragmented and labeled with the WT Terminal Labeling Kit (Affymetrix) at the Yale Center for Genome Anlaysis (YCGA) Microarray Core Facility.
Hybridization protocol Samples were hybridized with GeneChip® Human Transcriptome Array 2.0 (Affymetrix) and scanned at the Yale Center for Genome Anlaysis (YCGA) Microarray Core Facility.
Scan protocol Array scanning was performed according to the manufacturer's instruction (Affymetrix)
Data processing Data on coding genes were analyzed using Genespring GX 12.5 platform. Data were imported via exon expression workflow employing RMA16 (normalization) for analyzing the coding genes using the specific annotation support file for human transcriptome array 2.0 (as provided by Genespring GX).
Submission date Feb 15, 2016
Last update date Feb 16, 2016
Contact name Rakesh Verma
Organization name Yale University
Department Yale Cancer Center
Lab Hematology
Street address 333 Cedar St.
City New Haven
State/province CT
ZIP/Postal code 06510
Country USA
Platform ID GPL17585
Series (1)
GSE77924 Gene Expression Profiling of human monocytes: Combination Therapy with Anti–CTLA-4 and Anti–PD-1 Leads to Distinct Immunologic Changes In Vivo

Data table header descriptions
VALUE RMA signal

Data table
JUC01000001.hg.1 6.477883
JUC01000007.hg.1 5.526789
JUC01000009.hg.1 4.669708
JUC01000010.hg.1 9.989315
JUC01000023.hg.1 7.105884
JUC01000024.hg.1 4.977368
JUC01000026.hg.1 7.307265
JUC01000028.hg.1 5.050531
JUC01000032.hg.1 4.6934276
JUC01000033.hg.1 6.1691236
JUC01000039.hg.1 6.6179376
JUC01000040.hg.1 6.47367
JUC01000054.hg.1 6.427262
JUC01000056.hg.1 7.053049
JUC01000074.hg.1 6.7562566
JUC01000090.hg.1 7.005147
JUC01000108.hg.1 7.1348057
JUC01000109.hg.1 7.059187
JUC01000151.hg.1 6.8855605
JUC01000158.hg.1 6.2940216

Total number of rows: 67539

Table truncated, full table size 1756 Kbytes.

Supplementary file Size Download File type/resource
GSM2061431_Sample_73.CEL.gz 25.1 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap