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Sample GSM2035779 Query DataSets for GSM2035779
Status Public on Aug 05, 2016
Title rhh150_untreatedRep2P70327052014
Sample type SRA
Source name cell line
Organism Homo sapiens
Characteristics cell line: HACAT
treatment: NA
Extracted molecule genomic DNA
Extraction protocol See methods section in the associated manuscript
See methods section in the associated manuscript
Library strategy OTHER
Library source genomic
Library selection other
Instrument model Illumina NextSeq 500
Description rhh149-150_untreat_27052014_atact_hacat
processed data file: rhh149-150_untreat_27052014_atact_hacat_peaks.narrowPeak.gz
Data processing Library strategy: ATAC-Seq
bcl files were converted to fastq using bcl2fastq v2.15.0.4 with default options.
Genome_build: hg19
Supplementary_files_format_and_content: For narrowPeak format see MACS2 documentation at The text format files are differential binding and differential expression tables with columns: logFC: the log-abundance ratio, i.e. fold change, for each tag in the two groups being compared, logCPM: the log-average concentration/abundance for each tag in the two groups being compared, PValue exact p-value for differential expression using the NB model, FDR the p-value adjusted for multiple testing
Submission date Jan 08, 2016
Last update date May 15, 2019
Contact name Dario Beraldi
Organization name Cambridge Research Institute
Street address Robinson Way
City Cambridge
ZIP/Postal code CB2 0RE
Country United Kingdom
Platform ID GPL18573
Series (1)
GSE76688 G-quadruplex structures mark human regulatory chromatin
BioSample SAMN04393182
SRA SRX1525750

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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