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Sample GSM2035747 Query DataSets for GSM2035747
Status Public on Aug 05, 2016
Title HEK_Gibco_4
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: NHEK
treatment: NA
Extracted molecule total RNA
Extraction protocol See methods section in the associated manuscript
See methods section in the associated manuscript
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina NextSeq 500
 
Description HEK_Gibco_4
Data processing bcl files were converted to fastq using bcl2fastq v2.15.0.4 with default options.
See https://github.com/sblab-bioinformatics/dna-secondary-struct-chrom-lands/blob/master/Methods.md
Genome_build: hg19
Supplementary_files_format_and_content: For narrowPeak format see MACS2 documentation at https://github.com/taoliu/MACS/. The text format files are differential binding and differential expression tables with columns: logFC: the log-abundance ratio, i.e. fold change, for each tag in the two groups being compared, logCPM: the log-average concentration/abundance for each tag in the two groups being compared, PValue exact p-value for differential expression using the NB model, FDR the p-value adjusted for multiple testing
 
Submission date Jan 08, 2016
Last update date May 15, 2019
Contact name Dario Beraldi
E-mail(s) dario.beraldi@cruk.cam.ac.uk
Organization name Cambridge Research Institute
Street address Robinson Way
City Cambridge
ZIP/Postal code CB2 0RE
Country United Kingdom
 
Platform ID GPL18573
Series (1)
GSE76688 G-quadruplex structures mark human regulatory chromatin
Relations
BioSample SAMN04393150
SRA SRX1525718

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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