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Sample GSM203408 Query DataSets for GSM203408
Status Public on Jun 22, 2007
Title R749P01262
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 11.13554685
1053_at 6.648164624
117_at 7.194891073
121_at 9.823183891
1255_g_at 4.996484585
1294_at 8.082928437
1316_at 6.168274102
1320_at 5.687162344
1405_i_at 5.858688902
1431_at 4.548815426
1438_at 8.303346544
1487_at 8.201406422
1494_f_at 7.406513716
1598_g_at 10.37244372
160020_at 8.907971878
1729_at 8.496300221
1773_at 7.006895185
177_at 6.28160757
179_at 9.791675173
1861_at 7.686258795

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203408.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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