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Sample GSM203407 Query DataSets for GSM203407
Status Public on Jun 22, 2007
Title R748P01234
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.80650784
1053_at 6.07626876
117_at 8.030165938
121_at 9.435871403
1255_g_at 4.777056072
1294_at 7.970093465
1316_at 6.137782345
1320_at 5.597722718
1405_i_at 6.506488853
1431_at 4.586907149
1438_at 7.928497007
1487_at 8.122142509
1494_f_at 7.231470983
1598_g_at 10.99385896
160020_at 8.64665461
1729_at 8.575959879
1773_at 6.449150148
177_at 6.067405887
179_at 9.531652361
1861_at 6.344478191

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203407.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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