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Sample GSM203406 Query DataSets for GSM203406
Status Public on Jun 22, 2007
Title R746P00821
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.23590695
1053_at 6.530554608
117_at 6.942133508
121_at 9.602885096
1255_g_at 4.897409624
1294_at 8.215933654
1316_at 6.153697825
1320_at 5.864755329
1405_i_at 6.764169146
1431_at 4.619291469
1438_at 8.453071841
1487_at 8.206806011
1494_f_at 7.386424512
1598_g_at 10.55212748
160020_at 8.801801356
1729_at 8.370243991
1773_at 6.857926134
177_at 6.303086874
179_at 9.695978929
1861_at 7.687475386

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203406.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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