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Sample GSM203405 Query DataSets for GSM203405
Status Public on Jun 22, 2007
Title R745P00782
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.35052721
1053_at 6.370088573
117_at 6.815515412
121_at 9.605194768
1255_g_at 4.863620024
1294_at 8.479849572
1316_at 6.148977718
1320_at 5.596715441
1405_i_at 6.602745909
1431_at 4.70612754
1438_at 8.81055854
1487_at 8.126724199
1494_f_at 7.399083617
1598_g_at 10.57835788
160020_at 8.771848791
1729_at 8.245766431
1773_at 6.59350723
177_at 6.164391488
179_at 9.729623547
1861_at 6.824212425

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203405.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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