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Sample GSM203404 Query DataSets for GSM203404
Status Public on Jun 22, 2007
Title R744P00748
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.5289453
1053_at 6.824903308
117_at 6.785775006
121_at 9.39211768
1255_g_at 4.81819625
1294_at 8.394712719
1316_at 6.041552015
1320_at 5.634800862
1405_i_at 7.00662798
1431_at 4.644141324
1438_at 8.377149118
1487_at 8.280065069
1494_f_at 7.321995834
1598_g_at 10.9274012
160020_at 8.616118134
1729_at 8.439825343
1773_at 7.032354901
177_at 6.209751921
179_at 9.694584647
1861_at 7.5637926

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203404.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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