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Sample GSM203402 Query DataSets for GSM203402
Status Public on Jun 22, 2007
Title R742P00670
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.68788364
1053_at 6.336953087
117_at 6.800160339
121_at 9.760771486
1255_g_at 4.812839194
1294_at 9.244753525
1316_at 6.05741766
1320_at 5.751841999
1405_i_at 6.103996255
1431_at 4.675936725
1438_at 8.431849855
1487_at 8.098220715
1494_f_at 7.426178204
1598_g_at 11.0383549
160020_at 9.119921757
1729_at 8.412350129
1773_at 6.738211576
177_at 6.280172495
179_at 9.819846138
1861_at 7.444421902

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203402.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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