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Sample GSM203401 Query DataSets for GSM203401
Status Public on Jun 22, 2007
Title R741P00668
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor:not Known
Percentage of Stroma:not Known
Percentage of BPH:not Known
Percentage of Atrophic Gland:not Known
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.56185752
1053_at 6.58412989
117_at 6.720745551
121_at 9.445925627
1255_g_at 4.86241507
1294_at 8.502298349
1316_at 5.962741395
1320_at 5.585581999
1405_i_at 7.554625028
1431_at 4.579634599
1438_at 8.158882061
1487_at 8.272730419
1494_f_at 7.215530596
1598_g_at 10.75357604
160020_at 8.681306924
1729_at 8.414381683
1773_at 6.526986728
177_at 6.236515535
179_at 9.600675266
1861_at 7.733540873

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203401.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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