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Sample GSM203400 Query DataSets for GSM203400
Status Public on Jun 22, 2007
Title R727P01204
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 62%
Percentage of Stroma: 31%
Percentage of BPH: 3%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 11.04930653
1053_at 6.287684043
117_at 6.793457566
121_at 9.652605319
1255_g_at 4.873376377
1294_at 8.138734585
1316_at 6.104091211
1320_at 5.734236309
1405_i_at 6.644746038
1431_at 4.642141193
1438_at 8.530833082
1487_at 8.184046188
1494_f_at 7.372718013
1598_g_at 10.94753132
160020_at 8.845361119
1729_at 8.751519324
1773_at 6.815966198
177_at 6.233105322
179_at 9.6625608
1861_at 6.7403362

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203400.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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