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Sample GSM203380 Query DataSets for GSM203380
Status Public on Jun 22, 2007
Title R681P00686
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 14%
Percentage of Stroma: 54%
Percentage of BPH: 24%
Percentage of Atrophic Gland: 10%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.36326555
1053_at 6.832180797
117_at 6.797828109
121_at 9.652656693
1255_g_at 4.92971555
1294_at 8.13203802
1316_at 6.05561918
1320_at 5.763071827
1405_i_at 6.224344085
1431_at 4.612591325
1438_at 8.084091614
1487_at 8.028847079
1494_f_at 7.455292974
1598_g_at 10.41470968
160020_at 8.543628611
1729_at 8.180575583
1773_at 6.556028339
177_at 6.25969935
179_at 9.604205819
1861_at 7.423874646

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203380.CEL.gz 3.6 Mb (ftp)(http) CEL
Processed data included within Sample table

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