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Sample GSM203379 Query DataSets for GSM203379
Status Public on Jun 22, 2007
Title R668P01211
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 13%
Percentage of Stroma: 69%
Percentage of BPH: 11%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.6110578
1053_at 6.150182325
117_at 7.096113604
121_at 10.17022232
1255_g_at 4.962029696
1294_at 8.215134999
1316_at 6.290203083
1320_at 5.514531137
1405_i_at 5.944134246
1431_at 4.727390562
1438_at 8.309436345
1487_at 8.066729073
1494_f_at 7.768226045
1598_g_at 11.25557633
160020_at 9.37245279
1729_at 8.137470099
1773_at 6.638331713
177_at 6.636327872
179_at 9.804809284
1861_at 6.615673879

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203379.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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