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Sample GSM203378 Query DataSets for GSM203378
Status Public on Jun 22, 2007
Title R664P01207
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 75%
Percentage of BPH: 14%
Percentage of Atrophic Gland: 7%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.49188073
1053_at 6.27450721
117_at 7.267244978
121_at 10.27773269
1255_g_at 5.129128709
1294_at 8.635540836
1316_at 6.63087522
1320_at 5.601444953
1405_i_at 6.220470521
1431_at 4.828367695
1438_at 8.279517111
1487_at 8.065550109
1494_f_at 7.973151349
1598_g_at 11.35401326
160020_at 9.673943161
1729_at 8.268889654
1773_at 6.241372832
177_at 6.794225796
179_at 9.989090578
1861_at 6.884775201

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203378.CEL.gz 3.3 Mb (ftp)(http) CEL
Processed data included within Sample table

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