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Sample GSM203377 Query DataSets for GSM203377
Status Public on Jun 22, 2007
Title R663P00904
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 97%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 2%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 9.520451902
1053_at 6.3818408
117_at 7.167564108
121_at 9.996613022
1255_g_at 5.105966878
1294_at 8.554689831
1316_at 6.100122286
1320_at 5.910451987
1405_i_at 6.171175472
1431_at 4.93503651
1438_at 8.798315952
1487_at 7.921073313
1494_f_at 8.154798356
1598_g_at 12.02161584
160020_at 9.322703589
1729_at 8.042509595
1773_at 6.709254613
177_at 6.603788477
179_at 10.25475056
1861_at 7.27100516

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203377.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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