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Sample GSM203374 Query DataSets for GSM203374
Status Public on Jun 22, 2007
Title R653P01205
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 61%
Percentage of Stroma: 36%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.7748849
1053_at 7.625516742
117_at 6.726194928
121_at 9.740095005
1255_g_at 5.053633259
1294_at 8.046792926
1316_at 6.020938217
1320_at 5.925210654
1405_i_at 5.935014091
1431_at 4.626895911
1438_at 8.239245222
1487_at 8.286012896
1494_f_at 7.61327308
1598_g_at 10.9242252
160020_at 8.843807303
1729_at 7.76372976
1773_at 6.313131128
177_at 6.425183505
179_at 9.594589248
1861_at 7.117313879

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203374.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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