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Sample GSM203371 Query DataSets for GSM203371
Status Public on Jun 22, 2007
Title R650P01104
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 99%
Percentage of BPH: 0%
Percentage of Atrophic Gland: 0%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 9.347884923
1053_at 6.455759418
117_at 6.681171225
121_at 9.29678848
1255_g_at 4.800980862
1294_at 8.426731204
1316_at 6.007039546
1320_at 5.650913106
1405_i_at 7.733823454
1431_at 4.444548651
1438_at 7.819812396
1487_at 7.870980883
1494_f_at 7.247408887
1598_g_at 11.77857679
160020_at 8.589797772
1729_at 8.029620027
1773_at 6.567064804
177_at 6.274586053
179_at 9.481844384
1861_at 7.015050611

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203371.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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