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Sample GSM203370 Query DataSets for GSM203370
Status Public on Jun 22, 2007
Title R649P01087
Sample type RNA
 
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 67%
Percentage of BPH: 15%
Percentage of Atrophic Gland: 18%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
 
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
 
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
E-mail(s) ywang@sdibr.org
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
ID_REF
VALUE RMA calculated log2 Signal intensity

Data table
ID_REF VALUE
1007_s_at 10.42434795
1053_at 6.377163685
117_at 6.788790374
121_at 9.699154661
1255_g_at 4.853563357
1294_at 8.396066688
1316_at 6.019051924
1320_at 5.557818207
1405_i_at 6.892992641
1431_at 4.569550306
1438_at 7.955691084
1487_at 7.990768047
1494_f_at 7.331086542
1598_g_at 10.88701148
160020_at 8.900533753
1729_at 8.413589956
1773_at 6.324451084
177_at 6.178695921
179_at 9.465197626
1861_at 6.86546446

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.




Supplementary file Size Download File type/resource
GSM203370.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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