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Sample GSM203369 Query DataSets for GSM203369
Status Public on Jun 22, 2007
Title R648P01085
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 35%
Percentage of Stroma: 52%
Percentage of BPH: 2%
Percentage of Atrophic Gland: 12%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.51026382
1053_at 6.35535965
117_at 6.699238571
121_at 9.657337844
1255_g_at 4.923463227
1294_at 7.982434445
1316_at 6.015821455
1320_at 5.481100633
1405_i_at 6.595903877
1431_at 4.456318718
1438_at 8.11235387
1487_at 8.144892759
1494_f_at 7.229300994
1598_g_at 10.40683487
160020_at 8.798535252
1729_at 8.357573652
1773_at 6.380792303
177_at 6.239905591
179_at 9.403049788
1861_at 6.98730915

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203369.CEL.gz 3.4 Mb (ftp)(http) CEL
Processed data included within Sample table

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