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Sample GSM203368 Query DataSets for GSM203368
Status Public on Jun 22, 2007
Title R647P01068
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 64%
Percentage of BPH: 31%
Percentage of Atrophic Gland: 3%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.6530527
1053_at 6.476578152
117_at 6.772035593
121_at 9.797269502
1255_g_at 4.876975801
1294_at 8.43538606
1316_at 5.94244604
1320_at 5.669921604
1405_i_at 6.827788505
1431_at 4.692301477
1438_at 8.282362629
1487_at 8.04665012
1494_f_at 7.470367429
1598_g_at 11.07231556
160020_at 8.876415274
1729_at 8.101543016
1773_at 6.593088304
177_at 6.407994712
179_at 9.793936517
1861_at 6.99005787

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203368.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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