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Sample GSM203367 Query DataSets for GSM203367
Status Public on Jun 22, 2007
Title R646P00806
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 88%
Percentage of BPH: 5%
Percentage of Atrophic Gland: 4%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.1180519
1053_at 6.360281511
117_at 6.668408208
121_at 9.448225463
1255_g_at 4.80547975
1294_at 8.886242491
1316_at 5.858059231
1320_at 5.60057204
1405_i_at 7.920774289
1431_at 4.592284722
1438_at 7.73497834
1487_at 7.806961766
1494_f_at 7.058993421
1598_g_at 10.97066181
160020_at 8.814151414
1729_at 8.065803007
1773_at 6.58710004
177_at 6.224738914
179_at 9.465559405
1861_at 7.260865381

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203367.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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