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Sample GSM203366 Query DataSets for GSM203366
Status Public on Jun 22, 2007
Title R645P00805
Sample type RNA
Source name prostate cancer sample
Organism Homo sapiens
Characteristics Percentage of Tumor: 0%
Percentage of Stroma: 76%
Percentage of BPH: 17%
Percentage of Atrophic Gland: 5%
Extracted molecule total RNA
Extraction protocol QiaGen Rneasy extraction of total RNA was performed according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 5 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix).
Hybridization protocol Following fragmentation, 10 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Drosophila Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 400.
Scan protocol GeneChips were scanned using the Affymetrix Scanner.
Description prostate
Data processing The data were analyzed and normalized with RMA.
Submission date Jun 21, 2007
Last update date Aug 14, 2011
Contact name Yipeng Wang
Phone 8585813960
Organization name Vaccine Research Institute of San Diego
Street address
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
Platform ID GPL96
Series (1)
GSE8218 Gene expression data from prostate cancer samples

Data table header descriptions
VALUE RMA calculated log2 Signal intensity

Data table
1007_s_at 10.54026028
1053_at 6.321498229
117_at 6.720647838
121_at 9.603425023
1255_g_at 4.828852037
1294_at 8.44123055
1316_at 5.897092674
1320_at 5.617804882
1405_i_at 6.693416974
1431_at 4.534443879
1438_at 8.018886817
1487_at 7.845816063
1494_f_at 7.233073858
1598_g_at 10.75742075
160020_at 8.905473289
1729_at 7.930105547
1773_at 6.540454638
177_at 6.300345276
179_at 9.585229455
1861_at 7.000131548

Total number of rows: 22283

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM203366.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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